This is a pipeline that detects mutational signatures from VCF files that have been processed by GATK Mutect2 pipeline. This pipeline uses 5 different algorithms.
step1.Sigprofiler.py
step2.Pmsignature.R
step3.DeconstructSigs.R
step4.SignalSummary.Rmd
step4.SignalKataegis.Rmd
step5.FitMS.Rmd